PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018885-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 212aa    MW: 23666.6 Da    PI: 6.763
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018885-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-054365123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C++ F++   L  H+++H
  NNU_018885-RA 43 YTCSFCKREFKSAQALGGHMNVH 65
                   9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.63E-64170No hitNo description
SMARTSM003550.00324365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1774370IPR007087Zinc finger, C2H2
PfamPF139121.7E-64366IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MERSRLNGIK DTGVDRISLT NNNEYYCLGG DYLGGFSRPP RSYTCSFCKR EFKSAQALGG  60
HMNVHRRDRA RLTQSPPWDG SELKPNPNAD PNFLLPSQST RLSSCTYRVP PLLSPNYFSC  120
FSSPISASSD DELKMRSAGS PLDPWSSKGG DIAQSKTETM KPFFGVGELN GFLQEDERKI  180
LKMAEIVRLD LEMGPHGDSK EDLDLELRLG YS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-123965329superman protein
2l1o_A2e-123965329Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274874.11e-156PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLM9WE191e-46M9WE19_POPEU; SUP1
STRINGVIT_05s0049g00070.t017e-44(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-30C2H2 family protein